ASN GC statement on anti-Black racism

The ASN GC affirms that Black Lives Matter and that anti-Black racism has no place in our community. We encourage all ASN members to read the society’s statement condemning anti-Black racism here. The statement includes a list of actions that we can take, as well as resources.

Importantly, the statement also includes a place to share any ideas you may have about how the society can work to reduce racism and its effects within the scientific community. We are strongly committed to backing up our words with actions, and the society is currently discussing concrete plans for future programs and initiatives.

Please reach out if you would like to be involved in these efforts, or if you have ideas about what we can do as a community. We are also here to listen to anyone who is suffering or struggling in the aftermath of the horrifying recent events. You can reach ASN through the link above, and us on the grad council at ASNgrads ‘at’ gmail.com, or on twitter @asngrads.

Conflict resolution—a hard “soft” skill

We all experience conflicts in our professional and personal lives, and a lot of conflicts can be challenging to resolve for many reasons. Maybe there’s a power imbalance if you have a conflict with your advisor, or maybe there’s scientific and emotional tension if you are having trouble navigating the shared lab workspace. Also, if you are a people pleaser like me, you might be a conflict avoider, but often it can be healthy and productive to work to resolve a conflict. I’m going to outline a technique that you can try, suggest how to prepare for a conflict resolution conversation, and provide ideas for additional resources.

Ready to resolve some conflicts? Here we go!

A technique you can try: Here is one framework that you can use to facilitate having a conversation about a conflict and developing a plan for resolving that conflict. This framework has several steps, but following the whole progression will help to both set up the conversation in the best light and then help to make sure that things change as a result of the conversation. In addition to talking through feelings and experiences, developing a concrete plan is a critical piece of resolving a conflict. I learned about this method from a leadership development course for life scientists that I took at Cornell University. I highly recommend looking for similar opportunities on your campus (more on that below).

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5 Ways to Get your Fieldwork Fix

Kelsey Lyberger (PhD student, UC Davis)

Maybe you are deep in the analysis and writing phase of your dissertation or maybe you do theoretical work. Whatever the reason, I often find myself itching to get outside. Here are some of the ways I get my fieldwork fix.

  1. Small-grant Funding: If you are looking to start up a new field study there are lots of small pots of money you can apply for. For example, many field stations and reserves have graduate student funding opportunities aimed to increase use. Other places to look are societies, such as ASN also offer student research grants, and university or department specific grants. I got my feet wet—literally—by starting up a long-term survey at a pond at one of the UC nature reserves, when they funded my proposal to look at genetic diversity in Daphnia. Now I have the excuse (obligation?) to drive out once a month to sample.
  2. Educational Outreach Programs: My favorite K-12 outreach program (and I’ve participated in a bunch over the years) is the KiDS program, which is run at a low-income, minority-serving elementary school next to one of my study sites. The students first run their own 9-week experiment growing plants in serpentine and loamy soils. The curriculum was created by a past graduate student and aligns with 5th grade learning standards. On the last day of the program, we take them on a full-day field trip to a natural reserve 20-min down the road to see those serpentine soils! Kids spend the day outside participating in activities led by ecology PhD students, many of whom get to talk about the research experiments they’re doing at that very reserve.
  3. TA a field course: This requires some taxon specific knowledge, but maybe less than you would think if you’re enthusiastic about learning more about that group. If you’re on the fence, it might be worth talking to the professor who teaches the class. This job often comes with the responsibility of handling logistics of field trip planning but is definitely worth it when you get to teach outside.
  4. Follow empirical friends: Ask fellow graduate students if they could use a hand. But be prepared for less than ideal conditions. Some of my favorite memories are from doing this because unlike normal people who go out in nature when it’s nice outside, ecologists go out when it’s dark, buggy, and rainy. I’ve identified algae in the intertidal at 4am, I’ve caught honeybees on busy street corners, and I’ve measured plants during a storm. I have also been on the receiving end of this, where grad student friends hiked up mountains to help me and I can’t thank them enough.
  5. No reason needed: Keeping work and play separate can be a good thing. Sometimes doing “real” fieldwork can get stressful. Remembering to record a million details, needing that one last observation or collection to get equal sample sizes, keeping things alive or cold to bring back to lab …the list goes on. It’s easy to start to attach those anxious feelings to the environment. So, every once in a while, I take the time to be outside just for the fun of it and remind myself that one of the reasons I entered into a PhD in evolution and ecology is because of the inherent joy the natural world brings me.

Choosing Our Words Carefully: Challenges in communicating science

Emma Lehmberg, PhD student
Rosenthal Lab, Texas A&M University

Currently, I am engaged in a truly arcane, largely benign dispute with my PhD advisor. 

In phylogenetics, sometimes you’ll see the phrase “true tree” written – this is the tree that represents the relationships as they have existed in nature. They are not hypotheses but the ideal truth of how these organisms have evolved. 

To my advisor, a true tree is undiscoverable because we cannot observe – or indirectly observe through precise modelling – the evolution of each taxon in a tree.  We can only ever estimate the relationships. I, on the other hand, believe that this tree is a possibility, that each phylogeny that is published with additional data is a step towards what these relationships truly are.

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Enhancing Figures: ggplot2 to Adobe Illustrator

Simon Tye, PhD student
Siepielski Lab, University of Arkansas

Introduction

Many graduate students use the open-source programming language R to compile, examine, and visualize data. For visualizations, online resources (e.g., R Cookbook) and major R packages (e.g., ggplot2, lattice, leaflet, plotly) are often the first steps taken. While these packages allow users to create a wide variety of captivating figures, it may be cumbersome to write code that performs the required task within a specific package’s framework.

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Electronic Lab Notebooks: Hope or Hype?

The lab notebook has long been hallowed as the fundamental unit of scientific research. From the cuneiform tablets to meticulous scrolls, written records of scientific discoveries have played a key role in human innovation. Because of this importance, before I switched to an electronic lab notebook, I would often wake up in a cold sweat, dreaming that fire, flood, or calamity had befallen the lab overnight and all of my treasured data and lab notebook had been forever lost. But in the wonderful age of cloud computing and digital documents, my fears are assuaged. In case of emergency, my trusty electronic lab notebook has my back.

What is an electronic lab notebook?

An electronic lab notebook is a complete and semi-digital set of documents that are stored on a device and often also in the cloud. Entries could be entirely stored in an app (either made for lab notebooks or a generic note-taking app) or exported in a generic file format (i.e. .pdf) and stored in your normal file system (i.e. Finder/Documents). These files, whether in an app or in your own filing system, are typically backed up in the cloud. This increases security (in case of loss/destruction/theft of your device) and also allows you to access your entries from other devices (such as at home or on the go from your phone). I will go into detail about how I manage each of these aspects in this blog post.

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Exploring Careers Outside of Academia

by Shengpei Wang

Determining which career you want to pursue can be a daunting task. In addition to loving research, part of my motivation for getting a PhD was to kick that decision down the road a bit. However, I need to find the path that’s right for me eventually, and it’s better to start early. Whether you have interests in staying in or leaving academia, I want to urge you to start to consider your future and take action, now.

There are many career options after getting a PhD. The most traditional route is to pursue a tenure track position at a R1 University. However, the supply of qualified PhDs greatly outnumbers available tenure track positions, especially in Biology. Just think about how many students your lab will train throughout your advisors’ career, that number minus one is the oversupply your lab produces (see this blog https://lucklab.ucdavis.edu/blog/2018/7/4/job-market for more involved calculations). Most of us will develop careers other than becoming a tenure track faculty. Within academia, there are roles such as non-tenured teaching positions, university administrators, student services, lab managers, staff scientists, etc. There are even more opportunities outside of academia, including non-academic research scientists, medical science liaison, science writers, management consultants, etc. I am not trying to persuade you to stay or to leave academia but to point out that only a very small number of us will reach the goal that most of us set out to achieve. Making a career choice may not be easy, but you will be better off if you start early.

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Work smarter, not harder: Resources for time management in graduate school

by Callie Chappell 

I’m a little obsessed with work efficiency. I track all of my time (details below), take notes on an iPad, and have a calendar that most people would shudder at. Throughout my life, people know me as the person to help “get s**t done.” However, I have a dirty secret: most of the time, I keep a 40-hour work week. And I don’t just keep a 40-hour work week, but I also regularly take long weekends, go on vacation, and spend a little too much time cleaning my apartment…I mean procrastinating.

This obsession with work efficiency was motivated by a sly comment I overheard while in high school. Working the check-in table at parent-teacher conferences, I overheard a classmate’s mother point at me and whisper, “that Callie, she’s a hard worker, but she’s not very smart.” Although it took some time for my self-confidence to recover, it motivated me to show her—and the world—that I could work harder and smarter.

In this post, I want to share some of the resources I use to maximize my work efficiency and I’d love to hear your strategies as well.

Calendars:

As an undergraduate, I used a Passion Planner to outline my time management for each day. I loved the Passion Planner because I could visually block off my time and included a wide range of times. Additionally, Passion Planner includes a variety of personal and professional goal-setting tools, both over the long and short-term. Although I no longer use the Passion Planner (I switched to a completely digital system) I still utilize these goal-setting strategies and I know several graduate students who love using the Passion Planner.

Other similar products include the Bullet Journal and the hipster’s (do people even talk about hipsters anymore?) favorite, the Moleskine.

Now, I keep several digital calendars for different topics (lab, the official lab calendar, university events, social events, coordinating with undergraduates I supervise, classes, etc.) and since they are mixed Google calendars and Outlook calendars (for some reason, Stanford no longer uses Gmail, much to my extreme displeasure), I sync them all through iCal. I also send scheduled to-do items from Todoist into their own separate calendars, but I will talk more about Todoist below.

Project Management:

As graduate students, we balance several projects at once. Most projects have many moving parts, collaborators, and perhaps also undergraduate research assistants. Because I often have a bazillion things on my plate, it’s useful for me to break each project into chunks, assign myself a soft deadline for each chunk, and also outsource those chunks to collaborators and other researchers. Luckily, some companies have thought much more about efficient management than most researchers, and I took a leaf out of the business school book when designing my project management strategy.

I use a combination of Trello and Todoist. Both are digital apps that can be organized by projects and integrate due dates and check lists. Most importantly, they can be shared with collaborators that can edit checklists and projects in real time.

I use Trello to organize projects. Each research project (dissertation chapter/paper) gets its own “Board” in Trello, which I can share with other Trello users to collaborate on. Below is an example I was working on for a summer, primarily in collaboration with two exemplary undergraduate researchers in the lab. As you can see here, for each board, I can create “Cards” for each component in the project. In each card, I can include check-lists, due dates (with calendar integration), attach documents, and do many other functions (see below). I move cards that I’m working on into “working” and “done” piles. This project management strategy is also useful for working on a team and especially with working with undergraduates. I can track which components of projects undergraduates are working on in Trello as they move cards from “to-do”, to “working” and “done” piles, as well as individual items on the checklists. This is especially useful to help undergrads work autonomously. I also ask undergraduates to upload scanned copies of their lab notebook pages to corresponding Trello cards to keep up-to-date on their experiments, even if I don’t see them in the lab.

Trello 1.png

Figure 1: This is what the desktop Trello interface looks like on Mac (personal information redacted). The web interface looks similar. As you can see, we have various “cards” (each labelled with the notebook, project, and experiment number) in “stacks” of “to-do”, “doing”, “done”, and “no longer doing”. Each of the 5 members working on this project had access to edit this board and we communicate with Slack (which Trello interfaces with). Additionally, Trello syncs with our team calendar, which also helps use coordinate lab work and stay on the same page with due dates. Trello also apparently syncs with GitHub and BitBucket (the Atlassian GitHub equivalent – Trello is an Atlassian product), although we’re not currently using this feature.

Trello 2

Figure 2: Within each card, we can include a summary of each experiment, a to-do list for the experiment, and attach files such as lab notebook pages, analysis, and figures. We use a shared Google Drive as the repository for all files, but Trello is a nice central area to refer to the status and key findings for each experiment. Personal information has been redacted.

As a compliment to Trello, I also use Todoist, which is a mega to-do list app (as the name implies). I don’t know about you, but I find the satisfaction of checking an item off a to-do list one of life’s great pleasures. In Todoist (see below), you can make multiple to-do lists for different tasks (some of my categories include various projects I’m working on, lab deadlines, class deadlines, re-occurring meetings, etc.) and each task is assigned a deadline, so it only shows up on my daily to-do list on the day it is relevant. Todoist also syncs with Google Calendar and iCal, so my to-do list items show up on my calendar as well, so I can plan around big (and small) deadlines that aren’t a calendar event. Todoist also lets you rank the urgency of various tasks, lets you tag tasks into categories, and tracks your accomplishments over time, in case you are interested and make weekly charts of what you’ve completed. Not that I do that…Also, you can share to-do lists with collaborators and assign different tasks to different collaborators.

Todoist

Figure 3: This is what the Todoist interface looks like on Mac (personal information redacted). As you can see, you can create various projects, and within each project, assign various tasks with due dates. For any given day, you can see which tasks are assigned for that day and which project they belong to. 

Time Management:

As graduate students, we often have more work than hours in the day. For me, the constant pressure to always be doing more has been challenging to combat, and at some points, mentally debilitating. I’ve tried to address this by tracking my time and letting myself feel okay about stopping work at 40 hours. A wise former graduate student told me this trick, and I’ve found it helps me stay focused when working and feel okay about not working. Of course, sometimes I work much more than 40 hours and other times, take time off.

However, I keep track of my hours using toggl, an old-fashioned timer for the 21st century. You can create “projects” and track the time spent on various tasks on the desktop or web interface, as well as their sleek app (see below). Toggl also generates weekly, monthly, yearly, (or any time you want) reports of your work, as well as the tasks you’ve worked on and how much time you spent. You can also use toggl to track billable hours, if you’ve got a side hustle. I use their weekly and monthly report feature to reflect on how I am spending my time and make adjustments.

Toggl

Figure 4: This is what the toggl desktop interface (right) and toggl online summary report looks like. As you can see, you can assign each task to a project, as well as a tag (for experiments, I used tags for each individual experiment number that corresponds to my lab notebook so I know how long each experiment takes me). Online, I can track how much I worked per day, as well as what tasks I spent my time on. This is what my last week looked like.

However, despite capping my obligatory work week at 40 focused hours, I don’t want to compromise what I’m able to accomplish. One helpful tool for time management, especially when working on heavy focus tasks like reading or writing, is the Pomodoro technique. Our lab has weekly/bi-weekly 2-hour writing sessions where we use this method. Essentially, you work really hard for a set amount of time (such as 25 minutes), followed by a short break (such as 5 minutes). These sessions are timed and seem to help us feel more productive and focused.

Finally, I think it’s important to note when you are working. Everyone is productive at different times, and it’s important to be aware of when you are most productive, creative, or hungry and plan your time around your natural rhythms. For example, I am very good about analytical tasks that require a lot of focus in the mornings, intellectually useless in the afternoons (optimal for mechanical tasks!), and very creative at night. Therefore, I reserve the mornings for reading papers and working on analysis, doing lab work in the afternoon, and writing in the evening.

Goal setting:

Knowing how you’re spending your time is much less important than feeling empowered about what you’re spending your time doing. I attended a great workshop earlier this year at the infamous Stanford d.school addressing vision and goal setting in scientific research. I got two main things out of that workshop about goal setting. First, goals can be ambitious, but must be broken down into actionable chunks. Second, goals must be prioritized by importance and urgency. One way to do that is to use an Eisenhower Matrix: take all goals for a set amount of time (i.e. a week, and break down each item into importance and urgency items in order to decide what to tackle immediately, what to tackle later, and what to delegate. I make yearly, monthly, and weekly goals with this method and revisit the goals at the end of each period, as well as compare my goal list with how I spent my time with the toggl reports. The Passion Planner has great built-in tools for goal setting as well, which was why I loved using mine for so long. One feature I especially appreciated was making space for personal, as well as professional, goals each week.

Electronic Lab Notebooks:

Perhaps unsurprisingly, I used an electronic lab notebook (ELN). Although this is a topic for another blog post, I do want to briefly mention that I have found using an electronic lab notebook very helpful to replicate experiments, keep data organized, and collaborate. I use Microsoft OneNote (totally free!) on an iPad with an Apple Pencil and keep both sterile by putting the iPad into a gallon freezer bag and the Apple Pencil in a Ziplock sandwich bag, spraying both down with ethanol. Yes, the Apple Pencil works fine through two plastic bags. Another free (for academics) electronic lab notebook system many like is Benchling. Although not widely adopted by ecologists, Benchling is well organized and has great support for molecular biology.

Even if you choose not to use any of these free apps, I hope this blog post was helpful in terms of thinking about productivity and project management. Even though I’m not a Facebook, Google, or Apple employee, going to school in the heart of Silicon Valley has encouraged me to embrace the campy-ness of innovation in my lab and life.

 

Organizing outreach events in the biological sciences

By Sheela Turbek

A basic understanding of biological processes is necessary for informed decision-making on societal issues such as public health, food security, and conservation. However, despite scientific consensus on many biological topics, including the validity of evolutionary theory, the benefits of vaccination, and the contributions of human behavior to climate change, these ideas continue to be subject to widespread debate by the general public. The United States is particularly culpable of low levels of scientific literacy. A 2015 poll by the Pew Center, for example, revealed that only 62% of U.S. adults believe that humans and other living beings have evolved through time. A mere 33% of the surveyed adults conceded that these beings evolved as a result of natural processes. One must look no further than the results of this poll to recognize the major disconnect that often exists between scientific consensus and public opinions regarding scientific topics.

As graduate students in the biological sciences, we have a responsibility to close this gap between scientific consensus and public understanding by learning how to effectively communicate our findings in a manner that is accessible to the general public. Organizing outreach events is a great way to practice science communication skills and break down common misconceptions about biological ideas and the scientific process. These events can range from one-time activities that require a low level of commitment (e.g., organizing a public lecture on a scientific topic or visiting a school to discuss careers in the biological sciences) to lasting partnerships with local organizations in order to enhance scientific literacy.

Below are several ideas for outreach activities that would be feasible to organize as graduate students. However, feel free to get creative! The possible ways in which to engage the general public in scientific research are endless.

  • Partner with a local museum to organize a monthly or annual event aimed at increasing public understanding of biological concepts such as evolutionary theory
  • Organize a public lecture that targets non-traditional audiences or coordinate with an established program that connects scientists with the public in informal settings such as coffee shops, restaurants, and bars (e.g., Science Cafés and Pint of Science)
  • Organize a nature walk that introduces participants to the natural history of local flora and fauna
  • Incorporate a citizen science component into your research. Check out this website for a cool project that leverages citizen science to study the abundance and diversity of native bees and wasps in Colorado
  • Participate in 30-60 minute Q&A sessions about the life of a scientist with classrooms around the world through Skype a Scientist
  • Organize an interactive event for undergraduate students (particularly non-science majors) at your university to enhance public understanding of evolutionary principles
  • Work with local middle and high school teachers to develop science curriculum through the National Science Foundation’s Research Experience for Teachers (RET) program
  • Hold a training workshop for public middle and high school teachers that provides innovative ways to teach topics such as climate change or evolutionary theory in the classroom

Depending on the type of outreach event that you are interested in planning, you may require financial support. Several funding sources exist to promote educational outreach activities in ecology and evolutionary biology:

In addition, some universities offer internal funding for outreach initiatives aimed at making research more accessible to the general public and strengthening relationships with the community.

In the post-truth era in which we arguably now live, it is more important then ever to convince the public that our research matters and that continued support for the biological sciences is a worthwhile endeavor. Organizing outreach events to increase scientific literacy and share recent scientific findings with the broader community will not only heighten public awareness of the importance of ongoing research, potentially improving our ability to secure funding in the future, but also increase diversity in the biological sciences by making science more accessible to audiences that have traditionally been excluded from the scientific process. Finally, participating in outreach initiatives will allow you to practice communicating the impact and relevance of your work clearly and concisely to diverse audiences, thereby making you a more effective writer, educator, and scientist.

 

How to get a Postdoc: It’s never too early to start thinking about it.

By Abigail Pastore

Assuming you intend to incorporate research in your future career, you will probably need to get a postdoc position.  Most academic positions expect job candidates to have at least a year as a postdoc to provide evidence of their skills as a researcher beyond their dissertation.  Possible career paths facilitated by a postdoc include professor positions at R1 institutions, small liberal arts colleges (SLACs), primarily undergraduate institutions (PUIs), and conducting research for government, non-profit or industry jobs.  

Regardless of your career plans, there are a few different strategies that an individual can mix and match to find the postdoc position that is correct for them.

A continuum of certainty

Graduating students generally fall on a continuum of how certain they are about what they want to research at the next step.  Some individuals know exactly what questions they want to address and how, and just need to find the support to do the work.  Other students may feel that a wider range of research topics would be acceptable. Depending on where a student falls on this continuum could dictate the path leading to their ideal job.

Here I outline three strategies for finding postdocs depending on the student’s degree of certainty regarding research topics.  These strategies are not mutually exclusive and can be mixed and matched.

On one side on the continuum: ‘I know exactly what project I want to do next.’

If this is the case, then write up that proposal ASAP.  Seriously, go write a rough draft right now.  There are several grants that you could apply for to take funding into your own hands, and the sooner you start preparing these grant applications the better.  Plus, it never hurts to clarify your ideas with the process of writing!  The added benefit of writing your proposal now is that it will be easier to talk to EVERYONE you meet about it.  This will help you get lots of feedback and aid in networking to find someone who might sponsor your research.  If you already have someone in mind to work with on the project, email them right away and talk to them about prospects of working together.  Send them a decent draft of your research proposal to show them how you are committed.

On the other side of the continuum: ‘I would be happy working on any number of different projects.’

If you’d be happy working on many different projects and are a bit crunched for time, getting on relevant listservs will give you an idea of what jobs are available.  Popular listservs are ECOLOG and EVOLDIR.  They are fun to watch in and of themselves, but you may want to filter emails using the word ‘postdoc’ so you don’t go nuts from getting hundreds of additional emails a week.  As you see job ads go by, make a spreadsheet that helps you keep due dates and application requirements straight.  Start early and apply for as many jobs as you can stomach.  The advantage of starting before you are ready for a job is that the first version of your applications will not be the best, so work out those bugs before its crunch time. And who knows, the perfect job may be willing to wait for you.

Anywhere in the middle of the continuum: ‘I’m not totally certain what I want to research, but I’ve narrowed it down.’

If you have some project ideas or favorite faculty members in mind, you can go ahead and start contacting people about opportunities they might have.  Make a list of the people you’d like to work with and email them to ask if they are interested in having a postdoc.  Ask if you can write a proposal together.  Start very early if this is the route you want to take because you will need a bit of luck for things to work out.

Mix and match these three strategies to suit your individual needs.  Common factors: (1) Start early. (2) Talk to lots of people.  To that end, be visible in the community, give talks at conferences, participate in national societies, and take other opportunities that arise.  When you talk to as many people as possible it will help refine your ideas, and improve your odds in this numbers game.  Talk to other graduate students and postdocs- it’ll put you in touch with other labs, and postdocs often become faculty members with big startup salaries from which they could hire you as a postdoc.  Finally, be productive so that people trust that you will help them be productive.

General tips for applications and interviews:  Always be genuine and honest about your interests and abilities-you want a job that fits you well.  If you go somewhere under false pretenses, everyone loses.  Emphasize what you can bring to the table, not what you are hoping to gain.  Do your homework- show researchers that you know their work and are interested in them specifically.  Once you get that interview, remember: you need to find out if this is the right job for you!  You are not begging for a job, you are looking for the glass slipper that fits. Talk to all the people in the lab you are interested in to find out about the lab culture and what it is like to work with their PI.  Also ask lots of questions to determine if these are the people you want to be spending your work day with.  You will get a job you want, it might just take time (and publications).  Most importantly on this journey: don’t panic!

Also check out some more blogs on the subject!

 

Have you got additional advice for prospective postdocs? Questions not addressed here? Job search horror stories?  SHARE THEM IN THE COMMENTS BELOW☺